Items where Author is "Mejino, Jose L V"

Article

Turner, Jessica A and Mejino, Jose L V and Brinkley, James F and Detwiler, Landon T and Lee, Hyo Jong and Martone, Maryann E and Rubin, Daniel L (2010) Application of neuroanatomical ontologies for neuroimaging data annotation. Frontiers in Neuroinformatics, 4 (10). pp. 1-12.

Kalet, Ira and Mejino, Jose L V and Wang, Vania and Whipple, Mark and Brinkley, James F (2009) Content-specific auditing of a large scale anatomy ontology. Journal of Biomedical Informatics, 42 (3). pp. 540-549.

Gu, Huanying and Wei, Duo and Mejino, Jose L V and Elhanan, Gai (2009) Relationship auditing of the FMA ontology. Journal of Biomedical Informatics, 42 (3). pp. 540-549.

Shapiro, Linda G and Chung, Emily and Detwiler, Landon T and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2005) Processes and Problems in the Formative Evaluation of an Interface to the Foundational Model of Anatomy Knowledge Base. Journal of the American Medical Informatics Association, 12 (1). pp. 35-46.

Noy, N. F. and Musen, M. A. and Mejino, Jose L V and Rosse, Cornelius (2004) Pushing the Envelope: Challenges in a Frame-Based Representation of Human Anatomy. Data and Knowledge Engineering, 48. pp. 335-359.

Rosse, Cornelius and Mejino, Jose L V (2003) A Reference Ontology for Bioinformatics: The Foundational Model of Anatomy. Journal of Biomedical Informatics, 36. pp. 478-500.

Rosse, Cornelius and Mejino, Jose L V and Modayur, Bharath R and Jakobovits, Rex M and Hinshaw, Kevin P and Brinkley, James F (1998) Motivation and Organizational Principles for Anatomical Knowledge Representation: The Digital Anatomist Symbolic Knowledge Base. Journal of the American Medical Informatics Association, 5 (1). pp. 17-40.

Book Section

Mejino, Jose L V and Detwiler, Landon T and Cox, Timothy C and Brinkley, James F (2017) Cross-species Mapping of Human and Mouse Craniofacial Structures. In: Proceedings, Annual Symposium of the American Medical Informatics Association. p. 2105.

Mejino, Jose L V and Detwiler, Landon T and Cox, Timothy C and Brinkley, James F (2016) Multi-species Ontologies of the Craniofacial Musculoskeletal System. In: Proceedings of the Joint International Conference on Biological Ontology and BioCreative (ICBO). IP03.

Detwiler, Landon T and Mejino, Jose L V and Brinkley, James F (2015) Converting the Foundational Model of Anatomy to OWL2. In: Proceedings, Fall Symposium of the American Medical Informatics Association. p. 1452.

Mejino, Jose L V and Detwiler, Landon T and Brinkley, James F (2015) An ontology of the craniofacial musculoskeletal system. In: Proceedings of the AMIA Spring Summit on Clinical Research Informatics. p. 358.

Brinkley, James F and Mejino, Jose L V and Detwiler, Landon T and Travillian, Ravensara S and Clarkson, Melissa D. and Cox, Timothy C and Heike, C.L. and Cunningham, M.J. and Hochheiser, H. and Shapiro, Linda G (2013) Towards understanding craniofacial abnormalities: the ontology of craniofacial development and malformation. In: Proc AMIA Summit on Clinical Research Informatics. p. 20.

Mejino, Jose L V and Shapiro, Linda G and Brinkley, James F (2013) An ontology for human craniofacial development. In: Proceedings of the AMIA Spring Summit on Translational Bioinformatics. p. 108.

Nichols, Nolan and Mejino, Jose L V and Brinkley, James F (2011) The Foundational Model of Neuroanatomy Ontology: Ontology framework to support neuroanatomical data integration. In: Proceedings, International Conference on Biomedical Ontology (ICBO). pp. 444-445.

Nichols, Nolan and Turner, Jessica A and Detwiler, Landon T and Mejino, Jose L V and Rubin, Daniel L and Brinkley, James F (2011) Integrating semantically annotated multi-modal imaging datasets. In: Proceedings, Annual Meeting of the Society for Neuroscience. 841.04/ZZ81.

Nichols, Nolan and Turner, Jessica A and Detwiler, Landon T and Mejino, Jose L V and Rubin, Daniel L and Brinkley, James F (2011) Integration of Semantically Annotated Neuroimaging Data via Chained Queries. In: Front. Neuroinform. Conference Abstract: 4th INCF Congress of Neuroinformatics.

Steinert-Threlkeld, Shane and Ardekani, Siamak and Mejino, Jose L V and Detwiler, Landon T and Brinkley, James F and Halle, Michael and Kikinis, Ron and Winslow, Raimond L. and Miller, Michael I. and Ratnanather, J. Tilak (2011) Ontological labels for automated location of left ventricular remodeling. In: IEEE International Conference on Semantic Computing. pp. 572-573.

Mejino, Jose L V and Detwiler, Landon T and Turner, Jessica A and Martone, Maryann E and Rubin, Daniel L and Brinkley, James F (2010) Enabling RadLex with the Foundational Model of Anatomy Ontology to Organize and Integrate Neuro-imaging Data. In: Annual Symposium of the American Medical Informatics Association. p. 1171.

Brinkley, James F and Turner, Jessica A and Detwiler, Landon T and Mejino, Jose L V and Martone, Maryanne E and Rubin, Daniel L (2010) Intelligent Queries over BIRN Data using the Foundational Model of Anatomy and a Distributed Query-Based Data Integration System. In: Annual Symposium of the American Medical Informatics Association. p. 989.

Nichols, Nolan and Perlmutter, Aaron and Mejino, Jose L V and Brinkley, James F (2010) Representing Neural Connectivity in the Foundational Model of Anatomy Ontology. In: Annual Symposium of the American Medical Informatics Association. p. 1196.

Cook, Daniel L and Mejino, Jose L V and Neal, Maxwell L and Gennari, John H (2009) Composite annotations: requirements for mapping multiscale data and models to biomedical ontologies. In: Engineering in Medicine and Biology Conference.

Gennari, John H and Neal, Maxwell L and Mejino, Jose L V and Cook, Daniel L (2009) Using multiple reference ontologies: Managing composite annotations. In: International Conference on Biomedical Ontology. pp. 83-86.

Cook, Daniel L and Mejino, Jose L V and Neal, Maxwell L and Gennari, John H (2008) Bridging Biological Ontologies and Biosimulation: The Ontology of Physics for Biology. In: American Medical Informatics Association Fall Symposium. pp. 136-140.

Mejino, Jose L V and Rubin, Daniel L and Brinkley, James F (2008) FMA-RadLex: An Application Ontology of Radiological Anatomy derived from the Foundational Model of Anatomy Reference Ontology. In: American Medical Informatics Association Fall Symposium. pp. 465-469.

Rosse, Cornelius and Mejino, Jose L V (2008) The Foundational Model of Anatomy Ontology. In: Anatomy Ontologies for Bioinformatics: Principles and Practice. Springer pp. 59-117.

Shaw, Marianne and Detwiler, Landon T and Brinkley, James F and Suciu, Dan and Mejino, Jose L V (2008) Generating Application Ontologies from Reference Ontologies. In: American Medical Informatics Association Fall Symposium. pp. 672-676.

Franklin, Joshua D and Mejino, Jose L V and Detwiler, Landon T and Rubin, Daniel L and Brinkley, James F (2008) Web Service Access to Semantic Web Ontologies for Data Annotation. In: American Medical Informatics Association Fall Symposium. p. 946.

Mejino, Jose L V and Martin, Richard F and Detwiler, Landon T and Brinkley, James F (2007) Challenges in Reconciling Different Views of Neuroanatomy in a Reference Ontology of Anatomy. In: American Medical Informatics Association Fall Symposium. p. 1046.

Smith, Barry and Mejino, Jose L V and Schultz, Stefan and Kumar, Anand and Rosse, Cornelius (2005) Anatomical information science. In: Seventh International Conference on Spatial Information Theory COSIT 2005. pp. 149-164.

Rosse, Cornelius and Kumar, Anand and Mejino, Jose L V and Cook, Daniel L and Detwiler, Landon T and Smith, Barry (2005) A Strategy for Improving and Integrating Biomedical Ontologies. In: American Medical Informatics Association Fall Symposium. (In Press)

Cook, Daniel L and Mejino, Jose L V and Rosse, Cornelius (2004) Evolution of a Foundational Model of Physiology: Symbolic Representation for Functional Bioinformatics. In: MedInfo 2004. pp. 336-340.

Rickard, K. L. and Mejino, Jose L V and Martin, Richard F and Agoncillo, Augusto V and Rosse, Cornelius (2004) Problems and Solutions with Integrating Terminologies into Evolving Knowledge Bases. In: MedInfo 2004. pp. 420-424.

Detwiler, Landon T and Chung, Emily and Li, A. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius and Shapiro, Linda G (2004) A Relation-Centric Query Engine for the Foundational Model of Anatomy. In: MedInfo 2004. pp. 341-345.

Mejino, Jose L V and Rosse, Cornelius (2004) Symbolic modeling of structural relationships in the Foundational Model of Anatomy. In: First International Workshop on Formal Biomedical Knowledge Representation (KR-MED 2004).

Detwiler, Landon T and Mejino, Jose L V and Rosse, Cornelius and Brinkley, James F (2003) Efficient Web-Based Navigation of the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. p. 829.

Martin, Richard F and Rickard, K. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2003) The Evolving Neuroanatomical Component of the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. p. 927.

Agoncillo, Augusto V and Mejino, Jose L V and Rickard, K. L. and Detwiler, Landon T and Rosse, Cornelius (2003) Proposed Classification of Cells in the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. p. 775.

Mejino, Jose L V and Agoncillo, Augusto V and Rickard, K. L. and Rosse, Cornelius (2003) Representing Complexity in Part-Whole Relationships within the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. pp. 450-454.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Rosse, Cornelius (2001) Foundational Model of Neuroanatomy: Implications for the Human Brain Project. In: American Medical Informatics Association Fall Symposium. pp. 438-442.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Mulligan, K. and Rosse, Cornelius (2001) A Next Generation Knowledge Source: Foundational Model of Neuroanatomy. In: Society for Neuroscience Annual Meeting. 23.48.

Mejino, Jose L V and Noy, N. F. and Musen, M. A. and Brinkley, James F and Rosse, Cornelius (2001) Representation of Structural Relationships in the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. p. 973.

Michael, J. and Mejino, Jose L V and Rosse, Cornelius (2001) The Role of Definitions in Biomedical Concept Representation. In: American Medical Informatics Association Fall Symposium. pp. 463-467.

Brinkley, James F and Albright, Evan M and Kim, S. and Mejino, Jose L V and Shapiro, Linda G and Rosse, Cornelius (2000) Visible Human, Construct Thyself: The Digital Anatomist Dynamic Scene Generator. In: Visible Human Project Conference 2000. National Library of Medicine pp. 27-28.

Rosse, Cornelius and Mejino, Jose L V and Shapiro, Linda G and Brinkley, James F (2000) Visible Human, Know Thyself: The Digital Anatomist Structural Abstraction. In: Visible Human Project Conference 2000. National Library of Medicine pp. 85-86.

Mejino, Jose L V and Rosse, Cornelius (1999) Conceptualization of Anatomical Spatial Entities in the Digital Anatomist Foundational Model. In: American Medical Informatics Association Fall Symposium. pp. 112-116.

Agoncillo, Augusto V and Mejino, Jose L V and Rosse, Cornelius (1999) Influence of the Digital Anatomist Foundational Model on Traditional Representations of Anatomical Concepts. In: American Medical Informatics Association Fall Symposium. pp. 2-6.

Mejino, Jose L V and Rosse, Cornelius (1998) The Potential of the Digital Anatomist Foundational Model for Assuring Consistency in UMLS Sources. In: American Medical Informatics Association Fall Symposium. pp. 825-829.

Monograph

Detwiler, Landon T and Mejino, Jose L V and Brinkley, James F (2015) From Frames to OWL2: Converting the Foundational Model of Anatomy and the Ontology of Craniofacial Development and Malformation. Technical Report. (Unpublished)