Items where Author is "Rosse, Cornelius"

Article

Smith, Barry and Ashburner, Michael and Rosse, Cornelius and Bard, Jonathan and Bug, William and Ceusters, Werner and Goldberg, Louis J and Eilbeck, Karen and Ireland, Amelia and Mungall, Christopher J and OBI Consortium, The and Leontis, Neocles and Roccaâ Serra, a b and Ruttenberg, Alan and Sansone, Susanna-Assunta and Shah, Migam and Whetzel, Patricia L and Lewissi, Suzanna (2007) The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration. Nature Biotechnology, 25 (11). pp. 1251-1255.

Donnelly, Maureen and Bittner, Thomas and Rosse, Cornelius (2006) A formal theory for spatial representation and reasoning in biomedical ontologies. Artificial Intelligence in Medicine, 36 (1). pp. 1-27.

Smith, Barry and Kumar, Anand and Ceusters, Werner and Rosse, Cornelius (2005) On carcinomas and other pathological entities. Comparative and Functional Genomics, 6 (7-8). pp. 379-387.

Smith, Barry and Ceusters, Werner and Klagges, Bert and Köhler, Jacob and Kumar, Anand and Lomax, Jane and Mungall, Chris and Neuhaus, Fabian and Rector, Alan L and Rosse, Cornelius (2005) Relations in biomedical ontologies. Genome Biology, 6 (5). R46.1-R46.15.

Shapiro, Linda G and Chung, Emily and Detwiler, Landon T and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2005) Processes and Problems in the Formative Evaluation of an Interface to the Foundational Model of Anatomy Knowledge Base. Journal of the American Medical Informatics Association, 12 (1). pp. 35-46.

Noy, N. F. and Musen, M. A. and Mejino, Jose L V and Rosse, Cornelius (2004) Pushing the Envelope: Challenges in a Frame-Based Representation of Human Anatomy. Data and Knowledge Engineering, 48. pp. 335-359.

Mork, Peter and Brinkley, James F and Rosse, Cornelius (2003) OQAFMA Querying Agent for the Foundational Model of Anatomy: a Prototype for Providing Flexible and Efficient Access to Large Semantic Networks. Journal of Biomedical Informatics, 36. pp. 501-517.

Kim, S. and Brinkley, James F and Rosse, Cornelius (2003) Profile of On-Line Anatomy Information Resources: Design and Instructional Implications. Clinical Anatomy, 16 (1). pp. 55-71.

Rosse, Cornelius and Mejino, Jose L V (2003) A Reference Ontology for Bioinformatics: The Foundational Model of Anatomy. Journal of Biomedical Informatics, 36. pp. 478-500.

Jakobovits, Rex M and Rosse, Cornelius and Brinkley, James F (2002) WIRM: an Open Source Toolkit for Building Biomedical Web Applications. Journal of the American Medical Informatics Association, 9 (6). pp. 557-570.

Brinkley, James F and Rosse, Cornelius (2002) Imaging Informatics and the Human Brain Project: the Role of Structure, Review. Yearbook of Medical Informatics 2002. pp. 111-128.

Brinkley, James F and Rosse, Cornelius (2002) Imaging and the Human Brain Project: a Review. Methods of Information in Medicine, 41. pp. 245-260.

Rosse, Cornelius (2000) Terminologia Anatomica; Considered from the Perspective of Next-Generation Knowledge Sources. Clinical Anatomy, 14. pp. 120-133.

Brinkley, James F and Wong, B. A. and Hinshaw, Kevin P and Rosse, Cornelius (1999) Design of an Anatomy Information System. Computer Graphics and Applications, 19 (3). pp. 38-48.

Rosse, Cornelius (1999) Anatomy Atlases. Clinical Anatomy, 12. pp. 293-299.

Rosse, Cornelius and Mejino, Jose L V and Modayur, Bharath R and Jakobovits, Rex M and Hinshaw, Kevin P and Brinkley, James F (1998) Motivation and Organizational Principles for Anatomical Knowledge Representation: The Digital Anatomist Symbolic Knowledge Base. Journal of the American Medical Informatics Association, 5 (1). pp. 17-40.

Brinkley, James F and Rosse, Cornelius (1997) The Digital Anatomist Distributed Framework and Its Applications to Knowledge Based Medical Imaging. Journal of the American Medical Informatics Association, 4 (3). pp. 165-183.

Brinkley, James F and Bradley, S. W. and Sundsten, John W and Rosse, Cornelius (1997) The Digital Anatomist Information System and Its Use in the Generation and Delivery of Web-Based Anatomy Atlases. Computers and Biomedical Research, 30. pp. 472-503.

Rosse, Cornelius (1995) The Potential of Computerized Representations of Anatomy in the Training of Health Care Providers. Academic Medicine, 70 (6). pp. 499-505.

Conley, D. M. and Kastella, K. G. and Sundsten, John W and Rauschning, Wolfgang and Rosse, Cornelius (1992) Computer-Generated Three-Dimensional Reconstruction of the Mediastinum Correlated with Sectional and Radiological Anatomy. Clinical Anatomy, 5. pp. 185-202.

Sundsten, JW and Brinkley, James F and Conley, DM and Eno, Kraig R and Kastella, KG and Rosse, Cornelius (1992) Three-dimensional computer graphics reconstructions of anatomy on videodisc. J. Audiovisual Media in Medicine, 15 (2). pp. 65-67.

Book Section

Rosse, Cornelius and Mejino, Jose L V (2008) The Foundational Model of Anatomy Ontology. In: Anatomy Ontologies for Bioinformatics: Principles and Practice. Springer pp. 59-117.

Brinkley, James F and Suciu, Dan and Detwiler, Landon T and Gennari, John H and Rosse, Cornelius (2006) A framework for using reference ontologies as a foundation for the semantic web. In: American Medical Informatics Association Fall Symposium. pp. 96-100.

Smith, Barry and Mejino, Jose L V and Schultz, Stefan and Kumar, Anand and Rosse, Cornelius (2005) Anatomical information science. In: Seventh International Conference on Spatial Information Theory COSIT 2005. pp. 149-164.

Detwiler, Landon T and Rosse, Cornelius (2005) Knowledge Base Version Reintegration. In: American Medical Informatics Association Fall Symposium.

Rosse, Cornelius and Kumar, Anand and Mejino, Jose L V and Cook, Daniel L and Detwiler, Landon T and Smith, Barry (2005) A Strategy for Improving and Integrating Biomedical Ontologies. In: American Medical Informatics Association Fall Symposium. (In Press)

Cook, Daniel L and Mejino, Jose L V and Rosse, Cornelius (2004) Evolution of a Foundational Model of Physiology: Symbolic Representation for Functional Bioinformatics. In: MedInfo 2004. pp. 336-340.

Distelhorst, G. M. and Hinshaw, Kevin P and Rosse, Cornelius and Brinkley, James F (2004) An Improved Natural Language Interface to a Complex Anatomical Knowledge Base. In: MedInfo 2004. p. 1575.

Detwiler, Landon T and Rosse, Cornelius and Shapiro, Linda G (2004) An Intuitive Graphical Query Interface for Protege Knowledge Bases. In: 7th International Protege Conference.

Fong, Christine and Rosse, Cornelius and Clark, J. I. and Shapiro, Linda G and Brinkley, James F (2004) An Ontology-based Image Repository for a Biomedical Research Lab. In: MedInfo 2004. p. 1598.

Rickard, K. L. and Mejino, Jose L V and Martin, Richard F and Agoncillo, Augusto V and Rosse, Cornelius (2004) Problems and Solutions with Integrating Terminologies into Evolving Knowledge Bases. In: MedInfo 2004. pp. 420-424.

Detwiler, Landon T and Chung, Emily and Li, A. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius and Shapiro, Linda G (2004) A Relation-Centric Query Engine for the Foundational Model of Anatomy. In: MedInfo 2004. pp. 341-345.

Smith, Barry and Rosse, Cornelius (2004) The Role of Foundational Relations in the Alignment of Biomedical Ontologies. In: MedInfo 2004. pp. 444-448.

Mejino, Jose L V and Rosse, Cornelius (2004) Symbolic modeling of structural relationships in the Foundational Model of Anatomy. In: First International Workshop on Formal Biomedical Knowledge Representation (KR-MED 2004).

Cook, Daniel L and Mejino, J.L.V. and Rosse, Cornelius (2004) The foundational model of anatomy: a template for the symbolic representation of multi-scale physiological functions. In: The 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society. pp. 5415-5418.

Travillian, Ravensara S and Rosse, Cornelius and Shapiro, Linda G (2003) An Approach to the Anatomical Correlation of Species through the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. pp. 669-673.

Detwiler, Landon T and Mejino, Jose L V and Rosse, Cornelius and Brinkley, James F (2003) Efficient Web-Based Navigation of the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. p. 829.

Martin, Richard F and Rickard, K. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2003) The Evolving Neuroanatomical Component of the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. p. 927.

Agoncillo, Augusto V and Mejino, Jose L V and Rickard, K. L. and Detwiler, Landon T and Rosse, Cornelius (2003) Proposed Classification of Cells in the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. p. 775.

Distelhorst, G. M. and Srivastava, V. and Rosse, Cornelius and Brinkley, James F (2003) A Prototype Natural Language Interface to a Large Complex Knowledge Base, the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. pp. 200-204.

Mejino, Jose L V and Agoncillo, Augusto V and Rickard, K. L. and Rosse, Cornelius (2003) Representing Complexity in Part-Whole Relationships within the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. pp. 450-454.

Mork, Peter and Suciu, Dan and Brinkley, James F and Rosse, Cornelius (2002) A Declarative Query Interface for Large Semantic Networks. In: American Medical Informatics Association Fall Symposium. p. 1110.

Brinkley, James F and Jakobovits, Rex M and Rosse, Cornelius (2002) An Online Image Management System for Anatomy Teaching. In: American Medical Informatics Association Fall Symposium. p. 983.

Jakobovits, Rex M and Brinkley, James F and Rosse, Cornelius and Weinberger, E. (2001) Enabling Clinicians, Researchers, and Educators to Build Custom Web-Based Biomedical Information Systems. In: American Medical Informatics Association Fall Symposium. pp. 279-283.

Rosse, Cornelius and Tuttle, M. S. (2001) Explaining the Brain to a Computer. In: Human Brain Project Annual Meeting.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Rosse, Cornelius (2001) Foundational Model of Neuroanatomy: Implications for the Human Brain Project. In: American Medical Informatics Association Fall Symposium. pp. 438-442.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Mulligan, K. and Rosse, Cornelius (2001) A Next Generation Knowledge Source: Foundational Model of Neuroanatomy. In: Society for Neuroscience Annual Meeting. 23.48.

Mejino, Jose L V and Noy, N. F. and Musen, M. A. and Brinkley, James F and Rosse, Cornelius (2001) Representation of Structural Relationships in the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. p. 973.

Michael, J. and Mejino, Jose L V and Rosse, Cornelius (2001) The Role of Definitions in Biomedical Concept Representation. In: American Medical Informatics Association Fall Symposium. pp. 463-467.

Campbell, B. and Brinkley, James F and Rosse, Cornelius (2001) The Virtual Anatomy Lab: a Hands-On Anatomy Learning Environment. In: MedVR 2001. pp. 85-87.

Campbell, B and Rosse, Cornelius and Brinkley, James F (2001) The Virtual Anatomy Lab: a hands-on anatomy learning environment. In: Proceedings, Medicine Meets Virtual Reality 2001. IOS Press, Amsterdam pp. 85-87.

Brinkley, James F and Albright, Evan M and Kim, S. and Mejino, Jose L V and Shapiro, Linda G and Rosse, Cornelius (2000) Visible Human, Construct Thyself: The Digital Anatomist Dynamic Scene Generator. In: Visible Human Project Conference 2000. National Library of Medicine pp. 27-28.

Rosse, Cornelius and Mejino, Jose L V and Shapiro, Linda G and Brinkley, James F (2000) Visible Human, Know Thyself: The Digital Anatomist Structural Abstraction. In: Visible Human Project Conference 2000. National Library of Medicine pp. 85-86.

Kalet, Ira J and Wu, J. and Lease, M. and Austin-Seymour, M. M. and Brinkley, James F and Rosse, Cornelius (1999) Anatomical Information in Radiation Treatment Planning. In: American Medical Informatics Association Fall Symposium. pp. 291-295.

Mejino, Jose L V and Rosse, Cornelius (1999) Conceptualization of Anatomical Spatial Entities in the Digital Anatomist Foundational Model. In: American Medical Informatics Association Fall Symposium. pp. 112-116.

Kim, S. and Brinkley, James F and Rosse, Cornelius (1999) Design Features of on-Line Anatomy Information Resources: A Comparison with the Digital Anatomist. In: American Medical Informatics Association Fall Symposium. pp. 560-564.

Agoncillo, Augusto V and Mejino, Jose L V and Rosse, Cornelius (1999) Influence of the Digital Anatomist Foundational Model on Traditional Representations of Anatomical Concepts. In: American Medical Informatics Association Fall Symposium. pp. 2-6.

Poliakov, Andrew V and Hinshaw, Kevin P and Rosse, Cornelius and Brinkley, James F (1999) Integration and Visualization of Multimodality Brain Data for Language Mapping. In: American Medical Informatics Association Fall Symposium. pp. 349-353.

Hahn, J. S. and Burnside, E. and Brinkley, James F and Rosse, Cornelius and Musen, M. A. (1999) Representing the Digital Anatomist Foundational Model as a Protege Ontology. In: American Medical Informatics Association Fall Symposium. p. 1070.

Wong, B. A. and Rosse, Cornelius and Brinkley, James F (1999) Semi-Automatic Scene Generation Using the Digital Anatomist Foundational Model. In: American Medical Informatics Association Fall Symposium. pp. 637-641.

Rosse, Cornelius and Shapiro, Linda G and Brinkley, James F (1998) The Digital Anatomist Foundational Model: Principles for Defining and Structuring Its Concept Domain. In: American Medical Informatics Association Fall Symposium. pp. 820-824.

Neal, P. J. and Shapiro, Linda G and Rosse, Cornelius (1998) The Digital Anatomist Spatial Abstraction: A Scheme for the Spatial Description of Anatomical Features. In: American Medical Informatics Association Fall Symposium. pp. 423-427.

Mejino, Jose L V and Rosse, Cornelius (1998) The Potential of the Digital Anatomist Foundational Model for Assuring Consistency in UMLS Sources. In: American Medical Informatics Association Fall Symposium. pp. 825-829.

Brinkley, James F and Rosse, Cornelius (1998) Requirements for an on-Line Knowledge-Based Anatomy Information System. In: American Medical Informatics Association Fall Symposium. pp. 892-896.

Brinkley, James F and Myers, L. M. and Prothero, J. S. and Heil, G. H. and Tsuruda, J. S. and Maravilla, K. R. and Ojemann, George A and Rosse, Cornelius (1997) A Structural Information Framework for Brain Mapping. In: Neuroinformatics: An Overview of the Human Brain Project. Lawrence Erlbaum pp. 309-334.

Modayur, Bharath R and Prothero, J. and Rosse, Cornelius and Jakobovits, Rex M and Brinkley, James F (1996) Visualization and Mapping of Neurosurgical Functional Data onto a 3-D MR-Based Model of the Brain Surface. In: 1996 AMIA Fall Symposium. pp. 304-308.

Graney, D. and Conley, D. and Sundsten, John W and Ratiu, P. and Rauschning, Wolfgang and Brinkley, James F and Rosse, Cornelius (1995) Digital Anatomist Interactive Atlases. In: Journal of Clinical Anatomy. p. 213.

Conley, D. M. and Sundsten, John W and Ratiu, P. and Rauschning, Wolfgang and Rosse, Cornelius (1995) The Digital Anatomist Series: 3-D, Segmented, Dynamic Atlases of Body Regions. In: 19th Symposium on Computer Applications in Medical Care. p. 1016.

Brinkley, James F and Eno, Kraig R and Sundsten, John W and Conley, D. M. and Rosse, Cornelius (1995) A Distributed Framework for Distance Learning in Anatomy: The Digital Anatomist Interactive Atlas. In: 19th Symposium on Computer Applications in Medical Care. p. 972.

Rosse, Cornelius and Said, M. Ben and Eno, Kraig R and Brinkley, James F (1995) Enhancements of Anatomical Information in UMLS Knowledge Sources. In: 19th Annual Symposium on Computer Applications in Medical Care. pp. 873-877.

Bradley, S. W. and Rosse, Cornelius and Brinkley, James F (1995) Web-Based Access to an Online Atlas of Anatomy: The Digital Anatomist Common Gateway Interface. In: 19th Symposium on Computer Applications in Medical Care. pp. 512-516.

Conley, D. M. and Brinkley, James F and Rauschning, Wolfgang and Rosse, Cornelius (1993) A Multimedia Approach to the Study of the Mediastinum Utilizing a Computer-Generated Three-Dimensional Model. In: Proceedings, Annual Meeting of the American Association of Anatomists.

Rosse, Cornelius and Brinkley, James F and Prothero, J. (1990) Structural Informatics: The Representation of Anatomical Knowledge in Computer Readable Form. In: First Annual Educational and Research Conference. pp. 37-38.

Brinkley, James F and Prothero, J. S. and Prothero, John W and Rosse, Cornelius (1989) A Framework for the Design of Knowledge-Based Systems in Structural Biology. In: 15th Annual Symposium on Computer Applications in Medical Care. pp. 61-65.

Tarczy-Hornoch, Peter and Brinkley, James F and Shaker, R. and Mork, Peter and Donelson, L and Barrier, M and Gennari, John H and Rosse, Cornelius and Rossini, A and Suciu, Dan and Halevy, A. Bio-PDMS: A structural ontology driven peer data management system (PDMS) for biology. In: Biomedical Information Science and Technology Initiative (BISTI) Symposium.

Artefact

Sundsten, John W and Conley, D. M. and Ratiu, P. and Mulligan, K. A. and Rosse, Cornelius (2000) Digital Anatomist Web-Based Interactive Atlases. [Artefact]

Ratiu, P. and Rosse, Cornelius (1994) Animations of Knee Anatomy. [Artefact]

Conley, D. and Rosse, Cornelius (1994) Animations of Thoracic Viscera. [Artefact]

Conley, D. and Rosse, Cornelius (1994) Interactive Atlas of Thoracic Viscera. [Artefact]

Other

Rosse, Cornelius (1997) Study Guide for Gross Anatomy and Embryology. Department of Biological Structure, University of Washington.