Items where Author is "Brinkley, James F"

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Article

Detwiler, Landon T. and Mejino, Jose L.V. and Brinkley, James F (2016) From Frames to OWL2: Converting the Foundational Model of Anatomy. Artificial Intelligence in Medicine, 69. pp. 12-21. ISSN 09333657

Brinkley, James F and Detwiler, Landon T. (2012) A Query Integrator and Manager for the Query Web. Journal of Biomedical Informatics, 45. pp. 975-991.

Shaw, Marianne and Detwiler, Landon T and Noy, N. F. and Brinkley, James F and Suciu, Dan (2011) vSPARQL: A View Definition Language for the Semantic Web. Journal of Biomedical Informatics, 44 (1). pp. 102-117.

Turner, Jessica A and Mejino, Jose L V and Brinkley, James F and Detwiler, Landon T and Lee, Hyo Jong and Martone, Maryann E and Rubin, Daniel L (2010) Application of neuroanatomical ontologies for neuroimaging data annotation. Frontiers in Neuroinformatics, 4 (10). pp. 1-12.

Kalet, Ira and Mejino, Jose L V and Wang, Vania and Whipple, Mark and Brinkley, James F (2009) Content-specific auditing of a large scale anatomy ontology. Journal of Biomedical Informatics, 42 (3). pp. 540-549.

Detwiler, Landon T and Suciu, Dan and Franklin, Joshua D and Moore, Eider B and Poliakov, Andrew W and Lee, E Sally and Corina, David P and Ojemann, George A and Brinkley, James F (2009) Distributed XQuery-based integration and visualization of multimodality data: Application to brain mapping. Frontiers in Neuroinformatics.

Poliakov, Andrew V and X., Hertzenberg and Moore, Eider B and Corina, David P and Ojemann, George A and Brinkley, James F (2008) Unobtrusive Integration of Data Management With fMRI Analysis. NeuroInformatics, 5 (1). pp. 3-10.

Anderson, Nicholas R and Lee, E. Sally and Brockenbrough, J Scott and Minie, Mark E and Fuller, Sherrilynne and Brinkley, James F and Tarczy-Hornoch, Peter (2007) Issues in biomedical research data management and analysis: needs and barriers. Journal of the American Medical Informatics Association, 14. pp. 478-488.

Moore, Eider B and Poliakov, Andrew V and Lincoln, Peter and Brinkley, James F (2007) MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data. BMC Bioinformatics, 8. p. 389.

Poliakov, Andrew V and Albright, Evan M and Hinshaw, Kevin P and Corina, David P and Martin, Richard F and Brinkley, James F (2005) Server-based Approach to Web Visualization of Integrated Three-dimensional Brain Imaging Data. Journal of the American Medical Informatics Association, 12 (2). pp. 140-151.

Shapiro, Linda G and Chung, Emily and Detwiler, Landon T and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2005) Processes and Problems in the Formative Evaluation of an Interface to the Foundational Model of Anatomy Knowledge Base. Journal of the American Medical Informatics Association, 12 (1). pp. 35-46.

Corina, David P and Gibson, Erin K. and Martin, Richard F and Poliakov, Andrew V and Brinkley, James F and Ojemann, George A (2005) Dissociation of Action and Object Naming: Evidence From Cortical Stimulation Mapping. Human Brain Mapping, 24 (1). pp. 1-10.

Mork, Peter and Brinkley, James F and Rosse, Cornelius (2003) OQAFMA Querying Agent for the Foundational Model of Anatomy: a Prototype for Providing Flexible and Efficient Access to Large Semantic Networks. Journal of Biomedical Informatics, 36. pp. 501-517.

Kim, S. and Brinkley, James F and Rosse, Cornelius (2003) Profile of On-Line Anatomy Information Resources: Design and Instructional Implications. Clinical Anatomy, 16 (1). pp. 55-71.

Jakobovits, Rex M and Rosse, Cornelius and Brinkley, James F (2002) WIRM: an Open Source Toolkit for Building Biomedical Web Applications. Journal of the American Medical Informatics Association, 9 (6). pp. 557-570.

Hinshaw, Kevin P and Poliakov, Andrew V and Martin, Richard F and Moore, Eider B and Shapiro, Linda G and Brinkley, James F (2002) Shape-Based Cortical Surface Segmentation for Visualization Brain Mapping. Neuroimage, 16 (2). pp. 295-316.

Brinkley, James F and Rosse, Cornelius (2002) Imaging Informatics and the Human Brain Project: the Role of Structure, Review. Yearbook of Medical Informatics 2002. pp. 111-128.

Brinkley, James F and Rosse, Cornelius (2002) Imaging and the Human Brain Project: a Review. Methods of Information in Medicine, 41. pp. 245-260.

Corina, David P and McBurney, S. L. and Dodrill, C. and Hinshaw, Kevin P and Brinkley, James F and Ojemann, George A (1999) Functional Roles of Broca's Area and SMG: Evidence from Cortical Stimulation Mapping in a Deaf Signer. Neuroimage, 10 (5). pp. 570-581.

Brinkley, James F and Wong, B. A. and Hinshaw, Kevin P and Rosse, Cornelius (1999) Design of an Anatomy Information System. Computer Graphics and Applications, 19 (3). pp. 38-48.

Rosse, Cornelius and Mejino, Jose L V and Modayur, Bharath R and Jakobovits, Rex M and Hinshaw, Kevin P and Brinkley, James F (1998) Motivation and Organizational Principles for Anatomical Knowledge Representation: The Digital Anatomist Symbolic Knowledge Base. Journal of the American Medical Informatics Association, 5 (1). pp. 17-40.

Brinkley, James F and Rosse, Cornelius (1997) The Digital Anatomist Distributed Framework and Its Applications to Knowledge Based Medical Imaging. Journal of the American Medical Informatics Association, 4 (3). pp. 165-183.

Brinkley, James F and Bradley, S. W. and Sundsten, John W and Rosse, Cornelius (1997) The Digital Anatomist Information System and Its Use in the Generation and Delivery of Web-Based Anatomy Atlases. Computers and Biomedical Research, 30. pp. 472-503.

Brinkley, James F and Prothero, J. S. (1997) Slisp: A Flexible Software Toolkit for Hybrid, Embedded and Distributed Applications. Software -- Practice and Experience, 27 (1). pp. 33-48.

Modayur, Bharath R and Prothero, J. and Ojemann, George A and Maravilla, K. and Brinkley, James F (1997) Visualization-Based Mapping of Language Function in the Brain. Neuroimage, 6. pp. 245-258.

Jakobovits, Rex M and Lewis, L. M. and Ahrens, J. P. and Shapiro, Linda G and Tanimoto, S. L. and Brinkley, James F (1996) A Visual Database Environment for Scientific Research. Journal of Visual Languages and Computing, 7 (4). pp. 361-375.

Dailey, D. J. and Brinkley, James F (1996) A Metric for Quantifying Response Time in a Browser Application. IEEE Trans. Systems, Man and Cybernetics, Part A (Systems and Humans), 26 (2). pp. 271-275.

Brinkley, James F (1993) A Flexible, Generic Model for Anatomic Shape: Application to Interactive Two-Dimensional Medical Image Segmentation and Matching. Computers and Biomedical Research, 26. pp. 121-142.

Brinkley, James F and Eno, Kraig R and Sundsten, John W (1993) Knowledge-Based Client-Server Approach to Structural Information Retrieval: The Digital Anatomist Browser. Computer Methods and Programs in Biomedicine, 40. pp. 131-145.

Brinkley, James F (1991) Structural Informatics and Its Applications in Medicine and Biology. Academic Medicine, 66 (10). pp. 589-591.

Brinkley, James F and Altman, R. B. and Duncan, B. S. and Buchanan, B. G. and Jardetzky, O. (1988) Heuristic Refinement Method for the Derivation of Protein Solution Structures: Validation on Cytochrome B562. J. Chem. Inf. Comput. Sci., 28 (4). pp. 194-210.

Brinkley, James F and Muramatsu, SK and McCallum, WD and Popp, RL (1982) In vitro evaluation of an ultrasonic three-dimensional imaging and volume system. Ultrasonic Imaging, 4 (2). pp. 126-139. ISSN 01617346

McCallum, W.D. and Brinkley, James F (1979) Estimation of fetal weight from ultrasonic measurements. American Journal of Obstetrics and Gynecology, 133 (2). pp. 195-200. ISSN 00029378

Brinkley, James F and Moritz, William E. and Baker, Donald W. (1978) Ultrasonic three-dimensional imaging and volume from a series of arbitrary sector scans. Ultrasound in Medicine & Biology, 4 (4). pp. 317-321. ISSN 03015629

Book Section

Mejino, Jose L V and Detwiler, Landon T and Cox, Timothy C and Brinkley, James F (2017) Cross-species Mapping of Human and Mouse Craniofacial Structures. In: Proceedings, Annual Symposium of the American Medical Informatics Association. p. 2105.

Shaker, Ronald and Hertzenberg, Xenia and Brinkley, James F (2012) Lightweight Data Integration Frameworks for Clinical Research. In: 2012 AMIA Summit on Clinical Research Informatics. p. 152.

Hertzenberg, Xenia and Shaker, Ronald and Brinkley, James F (2012) RLab: A lightweight freezer management system for small laboratories. In: AMIA Spring Summit on Clinical Informatics. p. 164.

Nichols, Nolan and Detwiler, Landon T and Franklin, Joshua D and Brinkley, James F (2011) Distributed Queries for Quality Control Checks in Clinical Trials. In: Clinical Research Informatics Summit of the American Medical Informatics Association. p. 115.

Franklin, Joshua D and Guidry, Alicia F and Brinkley, James F (2011) A Partnership Approach for Electronic Data Capture in Small-Scale Clinical Trials. In: Clinical Research Informatics Summit of the American Medical Informatics Association. p. 10.

Detwiler, Landon T and Brinkley, James F (2011) Value Sets via Ontology Views. In: Clinical Research Informatics Summit of the American Medical Informatics Association. p. 100.

Wynden, Rob and Solbrig, Harold and Tu, Samson and Brinkley, James F (2011) The Value of Value Sets. In: Clinical Research Informatics Summit of the American Medical Informatics Association. pp. 162-163.

Mejino, Jose L V and Detwiler, Landon T and Turner, Jessica A and Martone, Maryann E and Rubin, Daniel L and Brinkley, James F (2010) Enabling RadLex with the Foundational Model of Anatomy Ontology to Organize and Integrate Neuro-imaging Data. In: Annual Symposium of the American Medical Informatics Association. p. 1171.

Brinkley, James F and Turner, Jessica A and Detwiler, Landon T and Mejino, Jose L V and Martone, Maryanne E and Rubin, Daniel L (2010) Intelligent Queries over BIRN Data using the Foundational Model of Anatomy and a Distributed Query-Based Data Integration System. In: Annual Symposium of the American Medical Informatics Association. p. 989.

Detwiler, Landon T and Shaw, Marianne and Brinkley, James F (2010) Ontology View Query Management. In: Annual Symposium of the American Medical Informatics Association. p. 1023.

Nichols, Nolan and Perlmutter, Aaron and Mejino, Jose L V and Brinkley, James F (2010) Representing Neural Connectivity in the Foundational Model of Anatomy Ontology. In: Annual Symposium of the American Medical Informatics Association. p. 1196.

Franklin, Joshua D and Detwiler, Landon T and Brinkley, James F (2009) Lightweight distributed XML-based integration of translational data. In: Annual Symposium of the American Medical Informatics Association. p. 847.

Detwiler, Landon T and Shaw, Marianne and Cook, Daniel L and Gennari, John H and Brinkley, James F (2009) Post-Coordinating Orthogonal Ontologies for Data Annotation. In: Annual Symposium of the American Medical Informatics Association. p. 815.

Guidry, Alicia F and Brinkley, James F and Anderson, Nicholas R and Tarczy-Hornoch, Peter (2008) Concept Mapping to Develop a Framework for Characterizing Electronic Data Capture (EDC) Systems. In: American Medical Informatics Association Fall Symposium. p. 960.

Mejino, Jose L V and Rubin, Daniel L and Brinkley, James F (2008) FMA-RadLex: An Application Ontology of Radiological Anatomy derived from the Foundational Model of Anatomy Reference Ontology. In: American Medical Informatics Association Fall Symposium. pp. 465-469.

Shaw, Marianne and Detwiler, Landon T and Brinkley, James F and Suciu, Dan and Mejino, Jose L V (2008) Generating Application Ontologies from Reference Ontologies. In: American Medical Informatics Association Fall Symposium. pp. 672-676.

Detwiler, Landon T and Suciu, Dan and Brinkley, James F (2008) Regular Paths in SparQL: Querying the NCI Thesaurus. In: American Medical Informatics Association Fall Symposium. pp. 161-165.

Franklin, Joshua D and Mejino, Jose L V and Detwiler, Landon T and Rubin, Daniel L and Brinkley, James F (2008) Web Service Access to Semantic Web Ontologies for Data Annotation. In: American Medical Informatics Association Fall Symposium. p. 946.

Mejino, Jose L V and Martin, Richard F and Detwiler, Landon T and Brinkley, James F (2007) Challenges in Reconciling Different Views of Neuroanatomy in a Reference Ontology of Anatomy. In: American Medical Informatics Association Fall Symposium. p. 1046.

Yngve, Gary and Brinkley, James F and Cook, Daniel L and Shapiro, Linda G (2007) A Model Browser for Biosimulation. In: American Medical Informatics Association Fall Symposium. pp. 836-840.

Detwiler, Landon T and Brinkley, James F (2007) Querying Non-Materialized Ontology Views. In: American Medical Informatics Association Fall Symposium. p. 934.

Brinkley, James F and Ach, Daniel and Franklin, Joshua D and Anderson, Nicholas R and Stevens, Anne and Tarczy-Hornoch, Peter (2007) Tools for Clinical Trials Management: Handling the Norm and the Outliers. In: American Medical Informatics Association Fall Symposium. p. 5.

Li, Xiang and Gennari, John H and Brinkley, James F (2007) XGI: A Graphical Interface for XQuery Creation. In: American Medical Informatics Association Fall Symposium. pp. 453-457.

Detwiler, Landon T and Brinkley, James F (2006) Custom Views of Reference Ontologies. In: American Medical Informatics Association Fall Symposium. p. 909.

Fong, Christine and Brinkley, James F (2006) Customizable Electronic Laboratory Online (CELO): A Web-based Data Management System Builder for Biomedical Research Laboratories. In: American Medical Informatics Association Fall Symposium. p. 922.

Warren, Wayne and Agoncillo, Augusto V and Franklin, Joshua D and Brinkley, James F (2006) Intelligent web-based whole body visualization for anatomy education. In: American Medical Informatics Association Fall Symposium. p. 1136.

Brinkley, James F and Poliakov, Andrew V and Moore, Eider B and Detwiler, Landon T and Franklin, Joshua D and Corina, David P and Ojemann, George A (2006) Lightweight XML-based query, integration and visualization of distributed, multimodality brain imaging data. In: Society for Neuroscience Annual Meeting. 100.13.

Li, Hao and Gennari, John H and Brinkley, James F (2006) Model Driven Laboratory Information Management Systems. In: American Medical Informatics Association Fall Symposium. pp. 484-488.

Brinkley, James F and Suciu, Dan and Detwiler, Landon T and Gennari, John H and Rosse, Cornelius (2006) A framework for using reference ontologies as a foundation for the semantic web. In: American Medical Informatics Association Fall Symposium. pp. 96-100.

Wang, Kelan and Tarczy-Hornoch, Peter and Shaker, Ron and Mork, Peter and Brinkley, James F (2005) BioMediator data integration: beyond genomics to neuroscience data. In: American Medical Informatics Association Fall Symposium. pp. 779-783.

Smith, Veronica S and Shapiro, Linda G and Hanlon, D. and Martin, Richard F and Brinkley, James F and Poliakov, Andrew V and Ojemann, George A and Corina, David P (2005) Evaluating spatial normalization methods for the human brain. In: 27th Annual Conference of the IEEE Engineering and Biology Society (EMBS). pp. 5331-5334.

Bales, Nathan and Brinkley, James F and Lee, E. Sally and Mathur, Shobhit and Re, Chris and Suciu, Dan (2005) A Framework for XML-based Integration of Data, Visualization and Analysis in a Biomedical Domain. In: XSym 2005. pp. 207-221.

Warren, Wayne and Brinkley, James F (2005) Knowledge-Based, Interactive, Custom Anatomical Scene Creation for Medical Education: The Biolucida System. In: American Medical Informatics Association Fall Symposium. pp. 789-793.

Cho, Hansang and Corina, David P and Brinkley, James F and Ojemann, George A and Shapiro, Linda G (2005) A New Template Matching Method using Variance Estimation for Spike Sorting. In: IEEE EMBS Second International Neural Conference on Engineering.

Moore, Eider B and Poliakov, Andrew V and Brinkley, James F (2005) Web-enabled 3D Multimodality Brain Visualization in Java. In: Society for Neuroscience Annual Meeting. 570.2.

Martin, Richard F and Brinkley, James F and Hertzenberg, X. and Poliakov, Andrew V and Corina, David P and Ojemann, George A (2004) Anatomical Parcellation of Cortical Language Sites. In: MedInfo 2004. p. 1742.

Moore, Eider B and Poliakov, Andrew V and Brinkley, James F (2004) Brain Visualization in Java3D. In: MedInfo 2004. p. 1761.

Re, Chris and Brinkley, James F and Hinshaw, Kevin P and Suciu, Dan (2004) Distributed XQuery. In: Workshop on Information Integration on the Web (IIWeb). pp. 116-121.

Distelhorst, G. M. and Hinshaw, Kevin P and Rosse, Cornelius and Brinkley, James F (2004) An Improved Natural Language Interface to a Complex Anatomical Knowledge Base. In: MedInfo 2004. p. 1575.

Fong, Christine and Rosse, Cornelius and Clark, J. I. and Shapiro, Linda G and Brinkley, James F (2004) An Ontology-based Image Repository for a Biomedical Research Lab. In: MedInfo 2004. p. 1598.

Detwiler, Landon T and Chung, Emily and Li, A. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius and Shapiro, Linda G (2004) A Relation-Centric Query Engine for the Foundational Model of Anatomy. In: MedInfo 2004. pp. 341-345.

Tang, Z. and Kadiyska, Y. and Suciu, Dan and Brinkley, James F (2004) Results Visualization in the XBrain XML Interface to a Relational Database. In: MedInfo 2004. p. 1878.

Li, Hao and Brinkley, James F and Gennari, John H (2004) Semi-automatic Database Design for Neuroscience Experiment Management Systems. In: MedInfo 2004. p. 1717.

Hertzenberg, X. and Poliakov, Andrew V and Brinkley, James F (2004) Unobtrusive Integration of Data Management with fMRI Analysis. In: MedInfo 2004. p. 1639.

Poliakov, Andrew V and Moore, Eider B and Brinkley, James F (2004) Use of Remote Surface Based Tools for Visualizing Integrated Brain Imaging Data. In: MedInfo 2004. p. 1814.

Tang, Z. and Kadiyska, Y. and Li, Hao and Suciu, Dan and Brinkley, James F (2003) Dynamic XML Based Exchange of Relational Data: Application to the Human Brain Project. In: American Medical Informatics Association Fall Symposium. pp. 649-653.

Detwiler, Landon T and Mejino, Jose L V and Rosse, Cornelius and Brinkley, James F (2003) Efficient Web-Based Navigation of the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. p. 829.

Martin, Richard F and Rickard, K. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2003) The Evolving Neuroanatomical Component of the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. p. 927.

Distelhorst, G. M. and Srivastava, V. and Rosse, Cornelius and Brinkley, James F (2003) A Prototype Natural Language Interface to a Large Complex Knowledge Base, the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. pp. 200-204.

Mork, Peter and Suciu, Dan and Brinkley, James F and Rosse, Cornelius (2002) A Declarative Query Interface for Large Semantic Networks. In: American Medical Informatics Association Fall Symposium. p. 1110.

Brinkley, James F and Jakobovits, Rex M and Rosse, Cornelius (2002) An Online Image Management System for Anatomy Teaching. In: American Medical Informatics Association Fall Symposium. p. 983.

Jakobovits, Rex M and Brinkley, James F and Rosse, Cornelius and Weinberger, E. (2001) Enabling Clinicians, Researchers, and Educators to Build Custom Web-Based Biomedical Information Systems. In: American Medical Informatics Association Fall Symposium. pp. 279-283.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Rosse, Cornelius (2001) Foundational Model of Neuroanatomy: Implications for the Human Brain Project. In: American Medical Informatics Association Fall Symposium. pp. 438-442.

Lober, W. B. and Trigg, L. J. and Bliss, D. and Brinkley, James F (2001) IML: An Image Markup Language. In: American Medical Informatics Association Fall Symposium. pp. 403-407.

Kinbar, K. and Martin, Richard F and Hill, J. and Mulligan, K. and Poliakov, Andrew V and Brinkley, James F and Ojemann, George A and Corina, David P (2001) Naming Deficits During Cortical Stimulation Mapping: Functional Specificity Reconsidered. In: 8th Annual Meeting, Cognitive Neuroscience Society (CMS). p. 126.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Mulligan, K. and Rosse, Cornelius (2001) A Next Generation Knowledge Source: Foundational Model of Neuroanatomy. In: Society for Neuroscience Annual Meeting. 23.48.

Mejino, Jose L V and Noy, N. F. and Musen, M. A. and Brinkley, James F and Rosse, Cornelius (2001) Representation of Structural Relationships in the Foundational Model of Anatomy. In: American Medical Informatics Association Fall Symposium. p. 973.

Poliakov, Andrew V and Albright, Evan M and Corina, David P and Ojemann, George A and Martin, Richard F and Brinkley, James F (2001) Server-Based Approach to Web Visualization of Integrated 3-D Brain Mapping Data. In: Thirty-First Annual Meeting, Society for Neuroscience. 529.1.

Poliakov, Andrew V and Albright, Evan M and Corina, David P and Ojemann, George A and Martin, Richard F and Brinkley, James F (2001) Server-Based Approach to Web Visualization of Integrated 3-D Medical Image Data. In: American Medical Informatics Association Fall Symposium. pp. 533-537.

Campbell, B. and Brinkley, James F and Rosse, Cornelius (2001) The Virtual Anatomy Lab: a Hands-On Anatomy Learning Environment. In: MedVR 2001. pp. 85-87.

Corina, David P and Poliakov, Andrew V and Steury, K. and Martin, Richard F and Brinkley, James F and Mulligan, K. A. and Ojemann, George A (2000) Correspondences between Language Cortex Identified by Cortical Stimulation Mapping and FMRI. In: Neuroimage, Human Brain Mapping Annual Meeting. S295.

Martin, Richard F and Poliakov, Andrew V and Mulligan, K. A. and Kinbar, K. and Corina, David P and Maravilla, K. and Lettich, E. and Ojemann, George A and Brinkley, James F (2000) Multi-Patient Mapping of Language Sites on 3-D Brain Models. In: Abstracts, 30th Annual Meeting, Society for Neuroscience. 464.20.

Martin, Richard F and Poliakov, Andrew V and Mulligan, K. A. and Corina, David P and Ojemann, George A and Brinkley, James F (2000) Multi-Patient Mapping of Language Sites on 3-D Brain Models. In: Neuroimage, Human Brain Mapping Annual Meeting. S534.

Lober, W. B. and Brinkley, James F (2000) A Personal Annotated Image Server. In: JAMIA Supplement, Fall 2000 Annual Symposium. p. 1068.

Jakobovits, Rex M and Soderland, S. and Taira, R. K. and Brinkley, James F (2000) Requirements of a Web-Based Experiment Management System. In: American Medical Informatics Association Fall Symposium. pp. 374-378.

Poliakov, Andrew V and Jakobovits, Rex M and Martin, Richard F and Corina, David P and Brinkley, James F (2000) Software Tools for Visualization and Analysis of Human Brain Data for Language Mapping. In: Neuroimage, Human Brain Mapping Annual Meeting. S907.

Brinkley, James F and Albright, Evan M and Kim, S. and Mejino, Jose L V and Shapiro, Linda G and Rosse, Cornelius (2000) Visible Human, Construct Thyself: The Digital Anatomist Dynamic Scene Generator. In: Visible Human Project Conference 2000. National Library of Medicine pp. 27-28.

Rosse, Cornelius and Mejino, Jose L V and Shapiro, Linda G and Brinkley, James F (2000) Visible Human, Know Thyself: The Digital Anatomist Structural Abstraction. In: Visible Human Project Conference 2000. National Library of Medicine pp. 85-86.

Jakobovits, Rex M and Soderland, S. G. and Tiara, R. K. and Brinkley, James F (2000) The Web-Interfacing Repository Manager: A Framework for Developing Web-Based Multimedia Applications for Medical Research. In: International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences. pp. 527-533.

Lober, W. B. and Brinkley, James F (2000) XML-Based Image Annotation: PAIS - a Personal Annotated Image Server. In: Slice of Life 2000.

Kalet, Ira J and Wu, J. and Lease, M. and Austin-Seymour, M. M. and Brinkley, James F and Rosse, Cornelius (1999) Anatomical Information in Radiation Treatment Planning. In: American Medical Informatics Association Fall Symposium. pp. 291-295.

Corina, David P and Steury, K. R. and Mulligan, K. A. and Hinshaw, Kevin P and Poliakov, Andrew V and Brinkley, James F and Maravilla, K. R. and Ojemann, George A (1999) A Comparison of Language Cortex Indentified by Cortical Stimulation Mapping and FMRI Techniques. In: Abstracts, Society for Neuroscience Annual Meeting. 654.2.

Kim, S. and Brinkley, James F and Rosse, Cornelius (1999) Design Features of on-Line Anatomy Information Resources: A Comparison with the Digital Anatomist. In: American Medical Informatics Association Fall Symposium. pp. 560-564.

Stalder, D. S. and Brinkley, James F (1999) The Digital Anatomist Foundational Model Server. In: Perl Conference 3.0.

Poliakov, Andrew V and Hinshaw, Kevin P and Corina, David P and Steury, K. R. and Maravilla, K. R. and Ojemann, George A and Mulligan, K. A. and Brinkley, James F (1999) Integration and Visualization of Multimodality Brain Data for Language Mapping. In: Abstracts, Society for Neuroscience Annual Meeting. 654.1.

Poliakov, Andrew V and Hinshaw, Kevin P and Rosse, Cornelius and Brinkley, James F (1999) Integration and Visualization of Multimodality Brain Data for Language Mapping. In: American Medical Informatics Association Fall Symposium. pp. 349-353.

Lober, W. B. and Brinkley, James F (1999) A Portable Image Annotation Tool for Web-Based Anatomy Atlases. In: American Medical Informatics Association Fall Symposium. p. 1108.

Hahn, J. S. and Burnside, E. and Brinkley, James F and Rosse, Cornelius and Musen, M. A. (1999) Representing the Digital Anatomist Foundational Model as a Protege Ontology. In: American Medical Informatics Association Fall Symposium. p. 1070.

Wong, B. A. and Rosse, Cornelius and Brinkley, James F (1999) Semi-Automatic Scene Generation Using the Digital Anatomist Foundational Model. In: American Medical Informatics Association Fall Symposium. pp. 637-641.

Bowden, D. M. and Robertson, J. E. and Martin, Richard F and Dubach, M. F. and Wu, J. S. and McLean, M. R. and Brinkley, James F (1999) Web-Tools for Neuroscience Based on Neuronames, a Template Brain Atlas, Edgewarp and Geographic Information Systems Software. In: Fifth International Conference on Functional Mapping of the Human Brain.

Rosse, Cornelius and Shapiro, Linda G and Brinkley, James F (1998) The Digital Anatomist Foundational Model: Principles for Defining and Structuring Its Concept Domain. In: American Medical Informatics Association Fall Symposium. pp. 820-824.

Wong, B. A. and Brinkley, James F (1998) Dynamic 3-D Scene Navigation in Web-Based Anatomy Atlases. In: Proceedings, American Medical Informatics Association Fall Symposium. p. 1100.

Hinshaw, Kevin P and Brinkley, James F (1998) Incorporating Constraint-Based Shape Models into an Interactive System for Functional Brain Mapping. In: American Medical Informatics Association Fall Symposium. American Medical Informatics Association pp. 921-925.

Corina, David P and McBurney, S. L. and Hinshaw, Kevin P and Brinkley, James F and Lettich, E. and Ojemann, George A (1998) Left Hemisphere Specialization for American Sign Language: A Cortical Stimulation Study. In: Abstracts, Society for Neuroscience Annual Meeting. 15.4.

Jakobovits, Rex M and Brinkley, James F (1998) Query-by-Context: A Framework for Modelling and Navigating Multimedia Research Data. In: American Medical Informatics Association Fall Symposium. p. 1021.

Brinkley, James F and Rosse, Cornelius (1998) Requirements for an on-Line Knowledge-Based Anatomy Information System. In: American Medical Informatics Association Fall Symposium. pp. 892-896.

Brinkley, James F (1998) The Use of Anatomical Knowledge in Medical Imaging: An Overview of the University of Washington Structural Informatics Group. In: Advances in Biomedical Image Databases. Kluwer Academic Press pp. 89-116.

Modayur, Bharath R and Jakobovits, Rex M and Maravilla, K. and Ojemann, George A and Brinkley, James F (1997) Evaluation of a Visualization-Based Approach to Functional Brain Mapping. In: American Medical Informatics Association Fall Symposium. pp. 429-433.

Modayur, Bharath R and Ojemann, George A and Lettich, E. and Jakobovits, Rex M and Sundsten, John W and Brinkley, James F (1997) Information System for Mapping and Studying Cortical Language Organization. In: Abstracts, Society for Neuroscience Annual Meeting. p. 2228.

Jakobovits, Rex M and Brinkley, James F (1997) Managing Medical Research Data with a Web-Interfacing Repository Manager. In: American Medical Informatics Association Fall Symposium. pp. 454-458.

Hinshaw, Kevin P and Brinkley, James F (1997) Shape-Based Interactive Three-Dimensional Medical Image Segmentation. In: SPIE Medical Imaging: Image Processing. pp. 236-242.

Brinkley, James F and Myers, L. M. and Prothero, J. S. and Heil, G. H. and Tsuruda, J. S. and Maravilla, K. R. and Ojemann, George A and Rosse, Cornelius (1997) A Structural Information Framework for Brain Mapping. In: Neuroinformatics: An Overview of the Human Brain Project. Lawrence Erlbaum pp. 309-334.

Hinshaw, Kevin P and Brinkley, James F (1997) Using 3-D Shape Models to Guide Segmentation of MR Brain Images. In: American Medical Informatics Association Fall Symposium. American Medical Informatics Association pp. 469-473.

Modayur, Bharath R and Prothero, J. and Rosse, Cornelius and Jakobovits, Rex M and Brinkley, James F (1996) Visualization and Mapping of Neurosurgical Functional Data onto a 3-D MR-Based Model of the Brain Surface. In: 1996 AMIA Fall Symposium. pp. 304-308.

Jakobovits, Rex M and Modayur, Bharath R and Brinkley, James F (1996) A Web-Based Repository Manager for Brain Mapping Data. In: American Medical Informatics Association Fall Symposium. pp. 309-313.

Graney, D. and Conley, D. and Sundsten, John W and Ratiu, P. and Rauschning, Wolfgang and Brinkley, James F and Rosse, Cornelius (1995) Digital Anatomist Interactive Atlases. In: Journal of Clinical Anatomy. p. 213.

Brinkley, James F and Eno, Kraig R and Sundsten, John W and Conley, D. M. and Rosse, Cornelius (1995) A Distributed Framework for Distance Learning in Anatomy: The Digital Anatomist Interactive Atlas. In: 19th Symposium on Computer Applications in Medical Care. p. 972.

Rosse, Cornelius and Said, M. Ben and Eno, Kraig R and Brinkley, James F (1995) Enhancements of Anatomical Information in UMLS Knowledge Sources. In: 19th Annual Symposium on Computer Applications in Medical Care. pp. 873-877.

Hinshaw, Kevin P and Altman, R. B. and Brinkley, James F (1995) Shape-Based Models for Interactive Segmentation of Medical Images. In: SPIE Medical Imaging 1995: Image Processing. pp. 771-780.

Myers, L. M. and Brinkley, James F (1995) Visualization of Brain Surface Features Using Registered Partially Segmented MRI Scans. In: SPIE Medical Imaging: Image Display. pp. 43-52.

Myers, L. M. and Prothero, J. S. and Brinkley, James F (1995) Volume Rendering of Multi-Spectral MR Data for Brain Language Site Mapping. In: Advanced Visual Systems User Conference. pp. 471-480.

Bradley, S. W. and Rosse, Cornelius and Brinkley, James F (1995) Web-Based Access to an Online Atlas of Anatomy: The Digital Anatomist Common Gateway Interface. In: 19th Symposium on Computer Applications in Medical Care. pp. 512-516.

Brinkley, James F (1994) The Digital Anatomist Project. In: American Association for the Advancement of Science, Annual Meeting. p. 6.

Brinkley, James F (1994) A Distributed, Object-Oriented Framework for Medical Image Management and Analysis: Application to Evaluation of Medical Image Segmentation Techniques. In: IEEE Workshop on Biomedical Image Analysis. IEEE Computer Society Press pp. 194-203.

Brinkley, James F (1994) Educational Systems:Synopsis. In: Yearbook of Medical Informatics. American Medical Informatics Association pp. 465-467.

Dailey, D. J. and Eno, Kraig R and Brinkley, James F (1994) Performance Evaluation of a Distance Learning Program. In: 18th Annual Symposium on Computer Applications in Medical Care. pp. 76-80.

Shapiro, Linda G and Tanimoto, S. L. and Brinkley, James F and Ahrens, J. P. and Jakobovits, Rex M and Lewis, L. M. (1994) A Visual Database System for Data and Experiment Management in Model-Based Computer Vision. In: Proceedings of the Second Cad-Based Vision Workshop. pp. 64-72.

Sundsten, John W and Brinkley, James F and Eno, Kraig R (1993) Digital Anatomist Browser: Teaching Neuroanatomy with the Use of Digital and Video-Disc Images Accessed by Computer. In: Annual Meeting of American Association of Anatomists.

Conley, D. M. and Brinkley, James F and Rauschning, Wolfgang and Rosse, Cornelius (1993) A Multimedia Approach to the Study of the Mediastinum Utilizing a Computer-Generated Three-Dimensional Model. In: Proceedings, Annual Meeting of the American Association of Anatomists.

Dailey, D. J. and Eno, Kraig R and Zick, G. L. and Brinkley, James F (1993) A Network Model for Wide Area Access to Structural Information. In: 17th Symposium on Computer Applications in Medical Care. pp. 497-501.

Brinkley, James F (1993) The Potential for Three-Dimensional Ultrasound. In: Ultrasound in Obstetrics and Gynecology. Little, Brown and Company

Altman, R. B. and Brinkley, James F (1993) Probabilistic Constraint Satisfaction with Structural Models: Application to Organ Modelling by Radial Contours. In: 17th Symposium on Computer Applications in Medical Care. pp. 492-497.

Brinkley, James F (1992) Hierarchical Geometric Constraint Networks as a Representation for Spatial Structural Knowledge. In: 16th Annual Symposium on Computer Applications in Medical Care. pp. 140-144.

Sundsten, John W and Brinkley, James F and Eno, Kraig R and Harris, R. M. and Kastella, K. G. (1991) Interactive Use of Videodisc Animations of Computer-Reconstructed Human Brain. In: Abstracts, Annual Meeting, Society for Neuroscience.

Eno, Kraig R and Sundsten, John W and Brinkley, James F (1991) A Multimedia Anatomy Browser Incorporating a Knowledge Base and 3-D Images. In: Symposium on Computer Applications in Medical Care. pp. 727-731.

Greenes, R. G. and Brinkley, James F (1990) Radiology Applications. In: Medical Informatics: Computer Applications in Health Care. Addison Wesley pp. 324-365.

Rosse, Cornelius and Brinkley, James F and Prothero, J. (1990) Structural Informatics: The Representation of Anatomical Knowledge in Computer Readable Form. In: First Annual Educational and Research Conference. pp. 37-38.

Brinkley, James F and Prothero, J. S. and Prothero, John W and Rosse, Cornelius (1989) A Framework for the Design of Knowledge-Based Systems in Structural Biology. In: 15th Annual Symposium on Computer Applications in Medical Care. pp. 61-65.

Brinkley, James F (1988) Representing Biologic Objects as Geometric Constraint Networks. In: AAAI Spring Symposium Series: Artificial Intelligence in Medicine. pp. 7-8.

Monograph

Re, Chris and Brinkley, James F and Suciu, Dan (2006) A performant XQuery to SQL translator. Technical Report. (Unpublished)

This list was generated on Fri Apr 20 17:01:42 2018 PDT.